Variant report
| Variant | rs56141957 |
|---|---|
| Chromosome Location | chr21:17384534-17384535 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:17379808..17382152-chr21:17382746..17385605,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs16990117 | 1.00[EUR][1000 genomes] |
| rs16990578 | 1.00[EUR][1000 genomes] |
| rs16990828 | 1.00[EUR][1000 genomes] |
| rs16992521 | 1.00[EUR][1000 genomes] |
| rs16992557 | 1.00[EUR][1000 genomes] |
| rs16992628 | 1.00[EUR][1000 genomes] |
| rs366082 | 1.00[EUR][1000 genomes] |
| rs367091 | 1.00[EUR][1000 genomes] |
| rs392028 | 1.00[EUR][1000 genomes] |
| rs58289432 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58297914 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59169113 | 1.00[EUR][1000 genomes] |
| rs60199206 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73346759 | 1.00[EUR][1000 genomes] |
| rs73892584 | 1.00[EUR][1000 genomes] |
| rs73892585 | 1.00[EUR][1000 genomes] |
| rs73892591 | 1.00[EUR][1000 genomes] |
| rs73892592 | 1.00[EUR][1000 genomes] |
| rs73892593 | 1.00[EUR][1000 genomes] |
| rs73892594 | 1.00[EUR][1000 genomes] |
| rs73892598 | 1.00[EUR][1000 genomes] |
| rs73892601 | 1.00[EUR][1000 genomes] |
| rs73894705 | 1.00[EUR][1000 genomes] |
| rs73894706 | 1.00[EUR][1000 genomes] |
| rs73894707 | 1.00[EUR][1000 genomes] |
| rs73894709 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73894710 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs764003 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1064664 | chr21:17336936-17405756 | Enhancers Active TSS Flanking Active TSS Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv913414 | chr21:17383785-17459507 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:17384400-17386000 | Weak transcription | Osteobl | bone |
| 2 | chr21:17384400-17386200 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
