Variant report

Variant	rs16995531
Chromosome Location	chr20:15306125-15306126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:15293454..15295061-chr20:15304426..15306908,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12480080	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480304	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs1543397	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16995525	0.81[CEU][hapmap];0.88[AMR][1000 genomes]
rs16995555	0.81[CEU][hapmap];0.82[CHB][hapmap];0.91[ASN][1000 genomes]
rs17299383	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2023505	0.93[ASN][1000 genomes]
rs55718144	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6034151	0.85[YRI][hapmap]
rs6034152	0.82[CEU][hapmap]
rs6034154	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6034155	0.93[ASN][1000 genomes]
rs6043169	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs6043179	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs6043182	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6043199	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6043201	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6043211	0.82[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6043223	0.82[CHB][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6043225	0.82[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs6043227	0.87[ASN][1000 genomes]
rs6043230	0.82[CHB][hapmap];0.94[YRI][hapmap];0.93[ASN][1000 genomes]
rs6043231	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6079753	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs66715072	0.93[ASN][1000 genomes]
rs66927103	0.87[ASN][1000 genomes]
rs7261501	0.91[ASN][1000 genomes]
rs7273477	0.82[CHB][hapmap];0.90[ASN][1000 genomes]
rs8121124	0.82[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv524481	chr20:15007730-15382919	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv916795	chr20:15041479-15345528	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1060275	chr20:15084485-15327541	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1058890	chr20:15234769-15388360	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2755557	chr20:15250014-15323282	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv912787	chr20:15275538-15309089	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv912788	chr20:15275538-15332749	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv912789	chr20:15275538-15352001	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv2757712	chr20:15282448-15331007	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2758786	chr20:15282448-15331007	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1057619	chr20:15301890-15317978	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv3302	chr20:15302167-15324114	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1055943	chr20:15305258-15317978	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15303400-15308800	Weak transcription	HMEC	breast
2	chr20:15304200-15311000	Weak transcription	Fetal Heart	heart
3	chr20:15304800-15308400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr20:15305600-15306400	Enhancers	Gastric	stomach
5	chr20:15306000-15306400	Enhancers	Liver	Liver

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