Variant report

Variant	rs16995930
Chromosome Location	chr4:85926538-85926539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10516732	1.00[EUR][1000 genomes]
rs17009362	1.00[EUR][1000 genomes]
rs17009522	1.00[EUR][1000 genomes]
rs4569747	1.00[EUR][1000 genomes]
rs58296528	1.00[EUR][1000 genomes]
rs6824288	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6824340	1.00[EUR][1000 genomes]
rs72965167	1.00[EUR][1000 genomes]
rs7666556	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	esv3367963	chr4:85911017-86246036	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85906800-85927200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:85913400-85926800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:85915800-85935600	Weak transcription	Aorta	Aorta
4	chr4:85925400-85935400	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:85925400-85940600	Weak transcription	Left Ventricle	heart
6	chr4:85925600-85928000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:85925800-85932800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:85926200-85927800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:85926200-85927800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:85926200-85927800	Enhancers	NHDF-Ad	bronchial
11	chr4:85926200-85927800	Enhancers	Osteobl	bone
12	chr4:85926400-85927800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links