Variant report

Variant	rs17009362
Chromosome Location	chr4:85870283-85870284
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85868885..85870740-chr4:85874876..85876493,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10516732	1.00[EUR][1000 genomes]
rs16995930	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4569747	1.00[EUR][1000 genomes]
rs58296528	1.00[EUR][1000 genomes]
rs58516106	1.00[AMR][1000 genomes]
rs6824288	1.00[EUR][1000 genomes]
rs6824340	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72965167	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv508295	chr4:85822802-85885027	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85798800-85873200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:85809000-85872800	Weak transcription	A549	lung
3	chr4:85845600-85882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:85849200-85876000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:85851200-85876000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:85860600-85872800	Weak transcription	Esophagus	oesophagus
7	chr4:85860600-85877000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:85860800-85872800	Weak transcription	NH-A	brain
9	chr4:85861200-85872400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:85861200-85873600	Weak transcription	HUVEC	blood vessel
11	chr4:85863400-85872600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:85864200-85872800	Weak transcription	HSMM	muscle
13	chr4:85864400-85873200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:85864400-85876400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:85864400-85877200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:85864800-85870800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:85864800-85871800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:85865200-85876000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:85865200-85886400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr4:85865800-85885400	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:85866000-85886200	Weak transcription	Fetal Intestine Small	intestine
22	chr4:85866400-85872000	Weak transcription	HMEC	breast
23	chr4:85866400-85872800	Weak transcription	Pancreas	Pancrea
24	chr4:85866400-85873200	Weak transcription	NHLF	lung
25	chr4:85866400-85879200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr4:85866600-85873200	Weak transcription	Osteobl	bone
27	chr4:85866800-85871600	Weak transcription	Lung	lung
28	chr4:85866800-85884600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:85867800-85878600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr4:85868800-85870400	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr4:85868800-85870400	Enhancers	Ovary	ovary
32	chr4:85869200-85870400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr4:85869200-85870400	Enhancers	Adipose Nuclei	Adipose
34	chr4:85869200-85870400	Enhancers	Brain Angular Gyrus	brain
35	chr4:85869200-85870400	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr4:85869200-85870400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr4:85869200-85871000	Enhancers	Stomach Mucosa	stomach
38	chr4:85869400-85870400	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr4:85869400-85870600	Enhancers	Fetal Heart	heart
40	chr4:85869600-85870400	Enhancers	Aorta	Aorta
41	chr4:85869600-85870400	Enhancers	Right Atrium	heart
42	chr4:85869600-85871800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:85869600-85872000	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr4:85869600-85872600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:85869600-85879800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr4:85869800-85870400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:85869800-85870400	Enhancers	Fetal Kidney	kidney
48	chr4:85869800-85872400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:85869800-85872600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr4:85869800-85872800	Weak transcription	HSMMtube	muscle

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