Variant report

Variant	rs16996083
Chromosome Location	chr20:15575007-15575008
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17694374	0.90[CEU][hapmap];0.96[EUR][1000 genomes]
rs17694826	0.91[CEU][hapmap]
rs17694839	0.81[CEU][hapmap]
rs455532	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs456029	0.83[JPT][hapmap];0.83[EUR][1000 genomes]
rs458289	0.82[EUR][1000 genomes]
rs464152	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15574000-15575200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:15574200-15575400	Enhancers	Fetal Heart	heart
3	chr20:15574600-15575200	Enhancers	Pancreas	Pancrea
4	chr20:15574800-15575800	Enhancers	Fetal Intestine Small	intestine
5	chr20:15575000-15575200	Enhancers	Fetal Intestine Large	intestine
6	chr20:15575000-15575200	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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