Variant report

Variant	rs17694826
Chromosome Location	chr20:15588780-15588781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12479987	0.82[EUR][1000 genomes]
rs12480038	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16996083	0.91[CEU][hapmap]
rs17622468	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs17694374	0.91[CEU][hapmap];1.00[AFR][1000 genomes]
rs17694839	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2111044	0.81[EUR][1000 genomes]
rs3803976	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs456029	0.92[CEU][hapmap]
rs458289	0.92[CEU][hapmap]
rs461936	0.85[EUR][1000 genomes]
rs462873	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs463308	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs464152	0.92[CEU][hapmap]
rs60303572	1.00[AFR][1000 genomes]
rs6110694	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs62196464	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15583200-15589000	Weak transcription	Fetal Heart	heart
2	chr20:15584800-15593600	Weak transcription	Fetal Intestine Small	intestine
3	chr20:15586200-15591000	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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