Variant report

Variant	rs461936
Chromosome Location	chr20:15584090-15584091
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17622468	0.80[EUR][1000 genomes]
rs17694826	0.85[EUR][1000 genomes]
rs17694839	0.83[EUR][1000 genomes]
rs3803976	0.84[EUR][1000 genomes]
rs456029	0.82[EUR][1000 genomes]
rs458289	0.81[EUR][1000 genomes]
rs462873	0.83[EUR][1000 genomes]
rs463308	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6110694	0.82[EUR][1000 genomes]
rs62196464	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15581800-15584200	Weak transcription	Fetal Intestine Small	intestine
2	chr20:15583200-15589000	Weak transcription	Fetal Heart	heart
3	chr20:15583800-15585400	Enhancers	Placenta	Placenta
4	chr20:15584000-15584800	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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