Variant report

Variant	rs16996336
Chromosome Location	chr21:39825397-39825398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1888468	1.00[MEX][hapmap]
rs2836583	1.00[MEX][hapmap]
rs7280887	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834098	chr21:39691898-39845254	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1059340	chr21:39817504-39881353	Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39811200-39847400	Weak transcription	Right Ventricle	heart
2	chr21:39812800-39844600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr21:39813200-39833400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr21:39820800-39825800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr21:39821000-39825400	Weak transcription	Adipose Nuclei	Adipose
6	chr21:39821000-39826200	Weak transcription	Fetal Muscle Leg	muscle
7	chr21:39821000-39829600	Weak transcription	Esophagus	oesophagus
8	chr21:39821000-39829600	Weak transcription	Left Ventricle	heart
9	chr21:39821000-39829600	Weak transcription	Lung	lung
10	chr21:39821000-39830800	Weak transcription	Aorta	Aorta
11	chr21:39821000-39830800	Weak transcription	Right Atrium	heart
12	chr21:39821000-39832000	Weak transcription	Spleen	Spleen
13	chr21:39821200-39829600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr21:39821200-39836400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr21:39821400-39829600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr21:39821800-39826600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr21:39822800-39826200	Strong transcription	HUVEC	blood vessel
18	chr21:39823200-39830600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr21:39824600-39825600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr21:39824600-39829600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr21:39825000-39825600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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