Variant report

Variant	rs1888468
Chromosome Location	chr21:39964746-39964747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16996336	1.00[MEX][hapmap]
rs2836545	0.88[LWK][hapmap];0.88[MKK][hapmap];0.82[YRI][hapmap]
rs2836583	1.00[MEX][hapmap]
rs7280243	1.00[MEX][hapmap]
rs7280887	1.00[MEX][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1888468	MSL3	trans	lymphoblastoid	seeQTL
rs1888468	ETS2	cis	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39955800-39971200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:39956600-39966000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:39964200-39964800	Enhancers	Fetal Brain Female	brain
4	chr21:39964400-39964800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr21:39964400-39965000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr21:39964400-39968800	Weak transcription	Spleen	Spleen
7	chr21:39964600-39965000	Active TSS	Aorta	Aorta
8	chr21:39964600-39965200	Bivalent/Poised TSS	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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