Variant report

Variant	rs2836545
Chromosome Location	chr21:39964298-39964299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39952017..39953838-chr21:39962654..39965463,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1013071	1.00[CEU][hapmap]
rs1041779	1.00[CEU][hapmap]
rs16996585	1.00[CEU][hapmap]
rs16996589	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs1888468	0.88[LWK][hapmap];0.88[MKK][hapmap];0.82[YRI][hapmap]
rs2155717	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2186921	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836540	1.00[CEU][hapmap]
rs2836544	0.90[CHB][hapmap]
rs2836556	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836557	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836558	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836559	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836560	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836561	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836562	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836563	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836564	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836567	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836568	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836570	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2836571	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2836574	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs56133221	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56681372	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58779165	0.83[EUR][1000 genomes]
rs60509736	0.90[ASN][1000 genomes]
rs60674021	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6517473	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7276220	1.00[CEU][hapmap]
rs7278530	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7278549	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7281963	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73432161	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73432179	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73432180	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73906359	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8128265	0.82[ASN][1000 genomes]
rs8128691	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8128701	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8129444	0.92[EUR][1000 genomes]
rs8130668	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8133374	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8133674	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9636942	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378727	chr21:39964137-39964474	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39955800-39971200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:39956600-39966000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:39963800-39964400	Enhancers	Fetal Muscle Leg	muscle
4	chr21:39964000-39964400	Enhancers	Fetal Muscle Trunk	muscle
5	chr21:39964000-39964400	Enhancers	Spleen	Spleen
6	chr21:39964200-39964600	Enhancers	Aorta	Aorta
7	chr21:39964200-39964800	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links