Variant report

Variant	rs2836574
Chromosome Location	chr21:39991893-39991894
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:39990350..39993337-chr21:39996090..39997790,2	MCF-7	breast:
2	chr21:39976854..39979728-chr21:39990683..39992423,2	K562	blood:
3	chr21:39991146..39992794-chr21:39993901..39996055,2	K562	blood:
4	chr21:39990821..39992376-chr21:39994985..39996602,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1013071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1041779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11911299	0.88[YRI][hapmap];0.80[AFR][1000 genomes]
rs16996585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16996589	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155717	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs2186921	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs2836540	1.00[CEU][hapmap]
rs2836545	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs2836556	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs2836557	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs2836559	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs2836561	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs2836564	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs2836567	0.94[YRI][hapmap]
rs2836568	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs2836570	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs2836571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836572	0.84[AFR][1000 genomes]
rs2836573	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs2836575	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836577	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs35361275	0.82[AFR][1000 genomes]
rs56303556	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58550284	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61121259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6517473	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs7276220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7278549	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs7281963	1.00[JPT][hapmap]
rs73442412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442419	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442435	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73908324	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73908326	0.84[AFR][1000 genomes]
rs73908329	0.83[AFR][1000 genomes]
rs73908330	0.84[AFR][1000 genomes]
rs8130668	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2836574	MXRA7	trans	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39989200-39997600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr21:39991400-39992600	Weak transcription	Fetal Muscle Leg	muscle
3	chr21:39991400-39993400	Enhancers	Osteobl	bone
4	chr21:39991600-39992200	Enhancers	NHDF-Ad	bronchial
5	chr21:39991600-39992600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr21:39991600-39993200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr21:39991600-39993400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr21:39991800-39992600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr21:39991800-39992600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr21:39991800-39992800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr21:39991800-39992800	Enhancers	HMEC	breast
12	chr21:39991800-39993200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links