Variant report

Variant	rs1013071
Chromosome Location	chr21:39995674-39995675
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39991146..39992794-chr21:39993901..39996055,2	K562	blood:
2	chr21:39990821..39992376-chr21:39994985..39996602,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1041779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16996585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16996589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2155717	1.00[CEU][hapmap]
rs2186921	1.00[CEU][hapmap]
rs2836540	1.00[CEU][hapmap]
rs2836545	1.00[CEU][hapmap]
rs2836556	1.00[CEU][hapmap]
rs2836557	1.00[CEU][hapmap]
rs2836559	1.00[CEU][hapmap]
rs2836561	1.00[CEU][hapmap]
rs2836564	1.00[CEU][hapmap]
rs2836568	1.00[CEU][hapmap]
rs2836570	1.00[CEU][hapmap]
rs2836571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836575	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2836576	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs56303556	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58550284	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61121259	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6517473	1.00[CEU][hapmap]
rs7276220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7278549	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7281963	1.00[JPT][hapmap]
rs73442412	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73442419	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73442433	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73442435	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73908324	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8130668	1.00[CEU][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39989200-39997600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr21:39993200-39996600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr21:39994600-39996000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr21:39994600-39996000	Weak transcription	Aorta	Aorta
5	chr21:39994800-39996000	Weak transcription	Spleen	Spleen
6	chr21:39995200-39996000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr21:39995200-39999200	Weak transcription	Gastric	stomach
8	chr21:39995200-40002400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr21:39995400-39995800	Enhancers	Fetal Kidney	kidney
10	chr21:39995400-39996600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr21:39995400-39996600	Enhancers	Ovary	ovary
12	chr21:39995600-39995800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr21:39995600-39995800	Enhancers	Fetal Lung	lung
14	chr21:39995600-39996600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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