Variant report

Variant	rs73442433
Chromosome Location	chr21:39992183-39992184
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:39990350..39993337-chr21:39996090..39997790,2	MCF-7	breast:
2	chr21:39976854..39979728-chr21:39990683..39992423,2	K562	blood:
3	chr21:39991146..39992794-chr21:39993901..39996055,2	K562	blood:
4	chr21:39990821..39992376-chr21:39994985..39996602,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1013071	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1041779	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11911299	0.80[AFR][1000 genomes]
rs16996585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16996589	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836571	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836572	0.84[AFR][1000 genomes]
rs2836573	0.84[AFR][1000 genomes]
rs2836574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836575	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836577	0.89[AFR][1000 genomes]
rs35361275	0.82[AFR][1000 genomes]
rs56303556	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58550284	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61121259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7276220	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442419	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442435	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73908324	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73908326	0.84[AFR][1000 genomes]
rs73908329	0.83[AFR][1000 genomes]
rs73908330	0.84[AFR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39989200-39997600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr21:39991400-39992600	Weak transcription	Fetal Muscle Leg	muscle
3	chr21:39991400-39993400	Enhancers	Osteobl	bone
4	chr21:39991600-39992200	Enhancers	NHDF-Ad	bronchial
5	chr21:39991600-39992600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr21:39991600-39993200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr21:39991600-39993400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr21:39991800-39992600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr21:39991800-39992600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr21:39991800-39992800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr21:39991800-39992800	Enhancers	HMEC	breast
12	chr21:39991800-39993200	Weak transcription	Aorta	Aorta
13	chr21:39992000-39992800	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links