Variant report

Variant	rs16996585
Chromosome Location	chr21:39990729-39990730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39990350..39993337-chr21:39996090..39997790,2	MCF-7	breast:
2	chr21:39976854..39979728-chr21:39990683..39992423,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1013071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1041779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11911299	0.88[YRI][hapmap];0.80[AFR][1000 genomes]
rs16996589	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155717	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2186921	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2836540	1.00[CEU][hapmap]
rs2836545	1.00[CEU][hapmap]
rs2836556	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2836557	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2836559	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2836561	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2836564	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2836567	1.00[YRI][hapmap]
rs2836568	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2836570	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2836571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836572	0.84[AFR][1000 genomes]
rs2836573	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs2836574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836575	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2836577	0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs35361275	0.82[AFR][1000 genomes]
rs56303556	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58550284	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61121259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6517473	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7276220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7278549	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7281963	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs73442412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442419	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73442435	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73908324	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73908326	0.84[AFR][1000 genomes]
rs73908329	0.83[AFR][1000 genomes]
rs73908330	0.84[AFR][1000 genomes]
rs8130668	1.00[CEU][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39986800-39990800	Weak transcription	Aorta	Aorta
2	chr21:39989200-39997600	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links