Variant report

Variant	rs58779165
Chromosome Location	chr21:39975354-39975355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39968614..39970527-chr21:39974019..39976201,2	MCF-7	breast:
2	chr21:39973136..39976022-chr21:39976251..39978959,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs2155717	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2186921	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836545	0.83[EUR][1000 genomes]
rs2836556	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836557	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836558	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836559	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836560	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836561	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836562	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836563	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836564	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836567	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836568	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836570	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2836572	0.82[AFR][1000 genomes]
rs2836573	0.82[AFR][1000 genomes]
rs2898356	0.87[AFR][1000 genomes]
rs35379792	0.87[AFR][1000 genomes]
rs56133221	0.83[EUR][1000 genomes]
rs56262750	0.87[AFR][1000 genomes]
rs56681372	0.83[EUR][1000 genomes]
rs60509736	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs60674021	0.83[EUR][1000 genomes]
rs61079927	0.83[AMR][1000 genomes]
rs6517473	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7278530	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7278549	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7281963	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73432161	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73432179	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73432180	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73906359	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73908326	0.82[AFR][1000 genomes]
rs73908329	0.81[AFR][1000 genomes]
rs73908330	0.82[AFR][1000 genomes]
rs8128265	0.83[AMR][1000 genomes]
rs8128691	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8128701	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8129444	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs8130668	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8133374	0.83[EUR][1000 genomes]
rs8133674	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9636942	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15632	chr21:39973933-39975874	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv965955	chr21:39974678-39976565	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39969000-39976600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:39970200-39977200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr21:39970400-39976600	Weak transcription	Fetal Brain Male	brain
4	chr21:39973000-39982000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr21:39974800-39977400	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links