Variant report

Variant	rs16997016
Chromosome Location	chr20:16031786-16031787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10485546	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16997066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2105203	1.00[MKK][hapmap]
rs6080109	1.00[CHB][hapmap];0.87[CHD][hapmap]
rs6135625	1.00[MKK][hapmap]
rs62196089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv585649	chr20:16004320-16066764	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1061301	chr20:16007489-16097070	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16029400-16033800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr20:16029600-16034200	Enhancers	Brain Germinal Matrix	brain
3	chr20:16030000-16031800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr20:16030000-16032200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr20:16030000-16032400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr20:16030000-16033000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr20:16030200-16031800	Enhancers	Primary hematopoietic stem cells	blood
8	chr20:16030200-16032000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr20:16030400-16031800	Enhancers	Ovary	ovary
10	chr20:16030800-16031800	Enhancers	Primary B cells from peripheral blood	blood
11	chr20:16031000-16031800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr20:16031000-16032000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr20:16031000-16032400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr20:16031200-16033400	Strong transcription	Primary B cells from cord blood	blood
15	chr20:16031200-16039200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr20:16031400-16032400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr20:16031400-16032600	Enhancers	Fetal Brain Female	brain
18	chr20:16031400-16032800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr20:16031600-16031800	Enhancers	Psoas Muscle	Psoas
20	chr20:16031600-16033000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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