Variant report

Variant	rs6135625
Chromosome Location	chr20:15959438-15959439
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16997016	1.00[MKK][hapmap]
rs2105203	1.00[MKK][hapmap]
rs6135623	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15953000-15959800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15957600-15959600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr20:15957800-15959800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr20:15957800-15959800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:15957800-15960000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr20:15958800-15959600	Weak transcription	Primary B cells from cord blood	blood
7	chr20:15959000-15959600	Weak transcription	GM12878-XiMat	blood
8	chr20:15959000-15959800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr20:15959000-15959800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr20:15959000-15985400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr20:15959200-15959800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr20:15959200-15959800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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