Variant report

Variant	rs16997595
Chromosome Location	chr20:16400808-16400809
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16393473..16395850-chr20:16400104..16401956,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11907241	1.00[JPT][hapmap]
rs16997605	1.00[MEX][hapmap]
rs17671618	0.86[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs4416282	1.00[JPT][hapmap]
rs6034553	1.00[MEX][hapmap]
rs6043935	0.89[ASW][hapmap]
rs6111004	1.00[JPT][hapmap]
rs6111005	1.00[JPT][hapmap]
rs6135707	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833931	chr20:16308276-16460596	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16372600-16404600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr20:16378000-16404400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr20:16384000-16432600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr20:16385200-16404200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr20:16385400-16404200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr20:16386200-16404400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr20:16386400-16404200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr20:16387000-16403000	Weak transcription	Fetal Stomach	stomach
9	chr20:16387000-16404200	Weak transcription	Gastric	stomach
10	chr20:16387000-16406400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr20:16387400-16404000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr20:16387400-16404400	Weak transcription	Esophagus	oesophagus
13	chr20:16387400-16411800	Weak transcription	Colonic Mucosa	Colon
14	chr20:16389600-16404200	Weak transcription	A549	lung
15	chr20:16391000-16401800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr20:16391600-16406400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr20:16391600-16410800	Weak transcription	Thymus	Thymus
18	chr20:16391800-16404200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr20:16391800-16404400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr20:16391800-16409800	Weak transcription	Brain Angular Gyrus	brain
21	chr20:16391800-16414600	Weak transcription	Colon Smooth Muscle	Colon
22	chr20:16392000-16404200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr20:16392000-16405600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr20:16392000-16406400	Weak transcription	Brain Anterior Caudate	brain
25	chr20:16392000-16407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr20:16392200-16404200	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr20:16392200-16412800	Weak transcription	Fetal Kidney	kidney
28	chr20:16392200-16453000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr20:16392400-16404200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr20:16392400-16411600	Weak transcription	Brain Substantia Nigra	brain
31	chr20:16393000-16403600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr20:16393800-16408200	Weak transcription	Small Intestine	intestine
33	chr20:16395200-16411400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr20:16396000-16411400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr20:16396200-16412800	Weak transcription	NHDF-Ad	bronchial
36	chr20:16396400-16411000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr20:16396600-16404400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr20:16396600-16406800	Weak transcription	Placenta	Placenta
39	chr20:16396800-16402400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr20:16397400-16412000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr20:16397600-16403400	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr20:16397800-16404200	Weak transcription	Spleen	Spleen
43	chr20:16398000-16404200	Weak transcription	Right Ventricle	heart
44	chr20:16398200-16417000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr20:16398200-16431000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr20:16398400-16402400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr20:16398400-16404200	Weak transcription	HepG2	liver
48	chr20:16398400-16404600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr20:16399000-16401000	Enhancers	Fetal Brain Male	brain
50	chr20:16399200-16404200	Weak transcription	Primary hematopoietic stem cells	blood

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