Variant report

Variant	rs6034553
Chromosome Location	chr20:16596275-16596276
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16589932..16591784-chr20:16595469..16597980,2	K562	blood:
2	chr20:16552663..16555302-chr20:16594757..16597060,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089177	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11907369	1.00[CHD][hapmap]
rs16997595	1.00[MEX][hapmap]
rs16997605	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055217	chr20:16568062-16596470	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv525956	chr20:16593159-16601519	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16590000-16596400	Weak transcription	Ovary	ovary
2	chr20:16590000-16602400	Weak transcription	Right Atrium	heart
3	chr20:16592200-16597000	Enhancers	Fetal Muscle Leg	muscle
4	chr20:16592600-16597400	Enhancers	Fetal Lung	lung
5	chr20:16592600-16597600	Enhancers	Fetal Stomach	stomach
6	chr20:16593000-16596400	Weak transcription	Colonic Mucosa	Colon
7	chr20:16594400-16596400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr20:16595400-16596400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr20:16595400-16596600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr20:16595400-16596800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr20:16595600-16596400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr20:16595600-16596600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr20:16595800-16596600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr20:16595800-16596600	Enhancers	Fetal Intestine Large	intestine
15	chr20:16595800-16596600	Enhancers	Rectal Smooth Muscle	rectum
16	chr20:16595800-16596600	Enhancers	HSMM	muscle
17	chr20:16595800-16596800	Enhancers	Hela-S3	cervix
18	chr20:16595800-16597000	Enhancers	Fetal Intestine Small	intestine
19	chr20:16595800-16597000	Enhancers	Small Intestine	intestine
20	chr20:16596000-16596400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr20:16596000-16596600	Enhancers	Colon Smooth Muscle	Colon
22	chr20:16596000-16596600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr20:16596000-16596800	Enhancers	Duodenum Mucosa	Duodenum
24	chr20:16596000-16596800	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr20:16596000-16596800	Enhancers	HSMMtube	muscle
26	chr20:16596000-16597000	Enhancers	Stomach Mucosa	stomach
27	chr20:16596000-16597400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr20:16596200-16596600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr20:16596200-16596800	Enhancers	Fetal Kidney	kidney
30	chr20:16596200-16596800	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links