Variant report

Variant	rs17001369
Chromosome Location	chr4:77011357-77011358
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77006287..77011420-chr4:77011515..77015802,5	K562	blood:
2	chr4:76987150..76989356-chr4:77009546..77012461,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17001355	0.82[ASW][hapmap];1.00[YRI][hapmap]
rs17001362	1.00[YRI][hapmap]
rs73826311	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7685216	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77008400-77011400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:77008400-77014200	Weak transcription	Pancreas	Pancrea
3	chr4:77008600-77011400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:77008600-77011600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:77008600-77011600	Weak transcription	Osteobl	bone
6	chr4:77008600-77016800	Weak transcription	Psoas Muscle	Psoas
7	chr4:77008800-77011600	Weak transcription	Fetal Heart	heart
8	chr4:77009000-77011400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr4:77009000-77011600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:77009000-77011600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:77009400-77011400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:77009400-77011800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:77010400-77011400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:77010400-77012200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr4:77010400-77012200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr4:77010400-77012200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr4:77010400-77012400	Enhancers	Primary hematopoietic stem cells	blood
18	chr4:77010400-77012800	Enhancers	Hela-S3	cervix
19	chr4:77010600-77012000	Enhancers	HUVEC	blood vessel
20	chr4:77010600-77012400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:77011200-77011400	Flanking Active TSS	K562	blood
22	chr4:77011200-77011600	Enhancers	NHEK	skin
23	chr4:77011200-77011800	Enhancers	Primary B cells from peripheral blood	blood
24	chr4:77011200-77011800	Enhancers	NHDF-Ad	bronchial
25	chr4:77011200-77012200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:77011200-77012200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:77011200-77012400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr4:77011200-77012400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr4:77011200-77012400	Enhancers	NHLF	lung
30	chr4:77011200-77012600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr4:77011200-77012800	Enhancers	HMEC	breast

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