Variant report

Variant	rs17002590
Chromosome Location	chrX:54776162-54776163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:54717158..54719505-chrX:54775797..54778195,2	MCF-7	breast:
2	chrX:54773140..54777273-chrX:54810826..54814004,3	MCF-7	breast:
3	chrX:54774175..54776353-chrX:54833889..54836552,3	MCF-7	breast:
4	chrX:54774408..54776198-chrX:54784673..54786791,2	MCF-7	breast:
5	chrX:54774068..54776985-chrX:54780395..54784626,6	MCF-7	breast:
6	chrX:54772826..54776525-chrX:54796935..54799648,3	MCF-7	breast:
7	chrX:54664052..54670964-chrX:54771169..54778919,20	MCF-7	breast:
8	chrX:54721055..54724661-chrX:54772042..54776183,8	MCF-7	breast:
9	chrX:54774475..54779142-chrX:54811522..54817030,7	MCF-7	breast:

No data

No data

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:54773000-54776400	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chrX:54773200-54777200	Enhancers	Fetal Thymus	thymus
3	chrX:54774600-54776200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chrX:54775600-54776800	Weak transcription	Primary T cells from cord blood	blood
5	chrX:54775600-54777200	Weak transcription	Psoas Muscle	Psoas
6	chrX:54775800-54776200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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