Variant report

Variant	rs2885192
Chromosome Location	chrX:54963366-54963367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1122799	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11541054	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs17002406	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.83[YRI][hapmap]
rs17002590	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6521790	1.00[MEX][hapmap]
rs6612176	1.00[MEX][hapmap]
rs6652207	1.00[MEX][hapmap]
rs7058892	1.00[JPT][hapmap]
rs7059574	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs7876887	1.00[MEX][hapmap]
rs7881427	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:54953800-54964600	Weak transcription	Psoas Muscle	Psoas
2	chrX:54955600-54963400	Weak transcription	Brain Cingulate Gyrus	brain
3	chrX:54955600-54964000	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chrX:54956800-54965600	Weak transcription	Brain Hippocampus Middle	brain
5	chrX:54957200-54964800	Strong transcription	Liver	Liver
6	chrX:54957800-54969000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chrX:54958600-54963600	Weak transcription	Brain Angular Gyrus	brain
8	chrX:54961000-54964400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chrX:54962200-54963800	Weak transcription	Brain Germinal Matrix	brain
10	chrX:54963000-54964200	Weak transcription	Adipose Nuclei	Adipose
11	chrX:54963000-54977000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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