Variant report

Variant	rs7059574
Chromosome Location	chrX:55024559-55024560
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1122799	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11541054	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17002406	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.83[YRI][hapmap]
rs2885192	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs6652207	1.00[MEX][hapmap]
rs7058892	1.00[JPT][hapmap]
rs7881427	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6912	chrX:54980516-55025317	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55018200-55025400	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chrX:55020200-55027600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chrX:55021600-55025000	Weak transcription	K562	blood
4	chrX:55021600-55025800	Active TSS	Adipose Nuclei	Adipose
5	chrX:55021800-55025600	Weak transcription	GM12878-XiMat	blood
6	chrX:55021800-55025800	Weak transcription	Primary B cells from peripheral blood	blood
7	chrX:55022000-55025600	Weak transcription	Fetal Intestine Large	intestine
8	chrX:55023200-55025600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chrX:55023400-55024600	Enhancers	Pancreas	Pancrea
10	chrX:55023600-55025600	Weak transcription	Fetal Heart	heart
11	chrX:55023600-55025600	Active TSS	Skeletal Muscle Female	skeletal muscle
12	chrX:55023600-55025800	Weak transcription	HepG2	liver
13	chrX:55023800-55024600	Enhancers	Psoas Muscle	Psoas
14	chrX:55023800-55025000	Weak transcription	Liver	Liver
15	chrX:55024200-55024800	Bivalent Enhancer	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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