Variant report

Variant	rs11541054
Chromosome Location	chrX:55033307-55033308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:55025024..55029548-chrX:55030587..55036147,10	MCF-7	breast:
2	chrX:55020153..55021970-chrX:55031922..55033816,2	K562	blood:
3	chrX:55030130..55032699-chrX:55032826..55036879,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158571	Chromatin interaction
ENSG00000169188	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1122799	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17002406	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.83[YRI][hapmap]
rs2885192	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs7058892	1.00[JPT][hapmap]
rs7059574	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7881427	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:55027400-55036000	Weak transcription	Aorta	Aorta
2	chrX:55027600-55034000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chrX:55027600-55035000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chrX:55027600-55035400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chrX:55027600-55035600	Weak transcription	Psoas Muscle	Psoas
6	chrX:55027800-55033400	Weak transcription	Right Ventricle	heart
7	chrX:55027800-55035200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chrX:55027800-55035400	Weak transcription	Brain Germinal Matrix	brain
9	chrX:55028000-55033600	Weak transcription	NH-A	brain
10	chrX:55028000-55033600	Weak transcription	NHDF-Ad	bronchial
11	chrX:55028000-55034000	Weak transcription	HSMMtube	muscle
12	chrX:55028000-55034400	Weak transcription	Primary hematopoietic stem cells	blood
13	chrX:55028000-55035000	Weak transcription	NHLF	lung
14	chrX:55028000-55035200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chrX:55028200-55034000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chrX:55028400-55033600	Strong transcription	Primary B cells from peripheral blood	blood
17	chrX:55028400-55033600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chrX:55028400-55033800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chrX:55028400-55034000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chrX:55028600-55033400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chrX:55028600-55033400	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chrX:55028600-55033600	Strong transcription	H1 Cell Line	embryonic stem cell
23	chrX:55028600-55033600	Strong transcription	Stomach Smooth Muscle	stomach
24	chrX:55028600-55034000	Strong transcription	Fetal Muscle Leg	muscle
25	chrX:55028600-55034000	Strong transcription	A549	lung
26	chrX:55028600-55034000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chrX:55028600-55034200	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chrX:55028600-55034200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chrX:55028600-55034600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chrX:55028600-55034600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chrX:55028800-55033400	Strong transcription	Fetal Intestine Large	intestine
32	chrX:55028800-55033600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chrX:55028800-55033600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chrX:55028800-55033600	Strong transcription	Left Ventricle	heart
35	chrX:55028800-55034000	Strong transcription	Fetal Thymus	thymus
36	chrX:55028800-55034000	Weak transcription	GM12878-XiMat	blood
37	chrX:55029000-55033400	Strong transcription	Dnd41	blood
38	chrX:55029000-55035800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chrX:55029200-55033400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chrX:55029200-55033800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chrX:55029200-55033800	Strong transcription	Thymus	Thymus
42	chrX:55029200-55034200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chrX:55029400-55033800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chrX:55029800-55033400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chrX:55029800-55036000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chrX:55030000-55033600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chrX:55030000-55035600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chrX:55030200-55033800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chrX:55030200-55033800	Strong transcription	Brain Hippocampus Middle	brain
50	chrX:55030200-55034000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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