Variant report

Variant	rs17002712
Chromosome Location	chr4:78431444-78431445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:78431407-78431457	HNPCEpiC	eye:	n/a
2	chr4:78431407-78431457	HAEpiC	amniotic membrane:	n/a
3	chr4:78431407-78431457	NHDF-neo	bronchial:	n/a
4	chr4:78431407-78431457	PFSK-1	brain:	n/a
5	chr4:78431407-78431457	SKMC	muscle:	n/a
6	chr4:78431407-78431457	BE2_C	brain:	n/a
7	chr4:78431407-78431457	LNCaP	prostate:	n/a
8	chr4:78431407-78431457	PANC-1	pancreas:	n/a
9	chr4:78431407-78431457	HCF	heart:	n/a
10	chr4:78431407-78431457	HCPEpiC	choroid plexus:	n/a
11	chr4:78431407-78431457	HMEC	breast:	n/a
12	chr4:78431407-78431457	T-47D	breast:	n/a
13	chr4:78431407-78431457	HRE	kidney:	n/a
14	chr4:78431407-78431457	AG04449	skin:	fetal
15	chr4:78431407-78431457	NH-A	brain:	n/a
16	chr4:78431407-78431457	NB4	blood:	n/a
17	chr4:78431407-78431457	Jurkat	blood:	n/a
18	chr4:78431407-78431457	HEK293	kidney:	embryo
19	chr4:78431407-78431457	GM06990	blood:	n/a
20	chr4:78431407-78431457	BJ	skin:	n/a
21	chr4:78431407-78431457	SK-N-SH_RA	brain:	n/a
22	chr4:78431407-78431457	GM12878	blood:	n/a
23	chr4:78431407-78431457	Caco-2	colon:	n/a
24	chr4:78431407-78431457	SK-N-MC	brain:	n/a
25	chr4:78431407-78431457	HIPEpiC	eye:	n/a
26	chr4:78431407-78431457	SK-N-SH	brain:	n/a
27	chr4:78431407-78431457	HepG2	liver:	n/a
28	chr4:78431407-78431457	ovcar-3	ovarian:	n/a
29	chr4:78431407-78431457	K562	blood:	n/a
30	chr4:78431407-78431457	NT2-D1	testis:	n/a
31	chr4:78431407-78431457	GM12892	blood:	n/a
32	chr4:78431407-78431457	HRPEpiC	eye:	n/a
33	chr4:78431407-78431457	CMK	blood:	n/a
34	chr4:78431407-78431457	HRCEpiC	kidney:	n/a
35	chr4:78431407-78431457	SAEC	small airway:	n/a
36	chr4:78431407-78431457	NHBE	bronchial:	n/a
37	chr4:78431407-78431457	HCT-116	colon:	n/a
38	chr4:78431407-78431457	AoSMC	blood vessel:	n/a
39	chr4:78431407-78431457	Hepatocyte	liver:	n/a
40	chr4:78431407-78431457	RPTEC	kidney:	n/a
41	chr4:78431407-78431457	H1-hESC	embryonic stem cell:	embryo
42	chr4:78431407-78431457	HUVEC	blood vessel:	n/a
43	chr4:78431407-78431457	Hela-S3	cervix:	n/a
44	chr4:78431407-78431457	AG04450	lung:	fetal
45	chr4:78431407-78431457	GM12891	blood:	n/a
46	chr4:78431407-78431457	HEEpiC	esophagus:	n/a
47	chr4:78431407-78431457	ProgFib	skin:	n/a
48	chr4:78431407-78431457	A549	lung:	n/a
49	chr4:78431407-78431457	HPAEpiC	pulmonary alveolar:	n/a
50	chr4:78431407-78431457	HCM	heart:	n/a

No data

Variant related genes	Relation type
CXCL13	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1604153	1.00[MEX][hapmap]
rs72860496	0.89[AFR][1000 genomes]
rs961973	1.00[MEX][hapmap];0.83[MKK][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434529	chr4:78388030-78470631	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78429600-78431600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:78431200-78431800	Enhancers	Fetal Muscle Leg	muscle

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