Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11931481	1.00[CHB][hapmap]
rs11933932	0.83[EUR][1000 genomes]
rs11938186	0.83[EUR][1000 genomes]
rs1500503	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002698	0.83[EUR][1000 genomes]
rs17002711	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17002712	1.00[MEX][hapmap]
rs17002731	1.00[JPT][hapmap]
rs17002732	1.00[JPT][hapmap]
rs17002734	1.00[JPT][hapmap]
rs17002735	1.00[JPT][hapmap]
rs2903238	0.83[EUR][1000 genomes]
rs41530748	1.00[JPT][hapmap]
rs4318671	1.00[CHB][hapmap]
rs58419747	0.83[EUR][1000 genomes]
rs60009608	0.83[EUR][1000 genomes]
rs60146447	0.83[EUR][1000 genomes]
rs60750805	0.83[EUR][1000 genomes]
rs60782487	0.83[EUR][1000 genomes]
rs61341260	0.83[EUR][1000 genomes]
rs7654195	1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs7669299	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7694642	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs961973	1.00[MEX][hapmap]
rs9761182	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1604153	CCL3	trans	brain	seeQTL
rs1604153	PTGS2	trans	brain	seeQTL
rs1604153	CCL4	trans	brain	seeQTL
rs1604153	EGR2	trans	brain	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78470800-78475000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:78471200-78474800	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr4:78472400-78474800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr4:78472400-78475000	ZNF genes & repeats	Liver	Liver

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