Variant report

Variant	rs41530748
Chromosome Location	chr4:78523641-78523642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78522249..78524588-chr4:78525171..78527688,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156234	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1354006	1.00[MEX][hapmap]
rs1500503	1.00[JPT][hapmap]
rs1604153	1.00[JPT][hapmap]
rs17002711	1.00[JPT][hapmap]
rs17002731	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17002732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17002734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17002735	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17002743	1.00[MEX][hapmap]
rs1802209	1.00[MEX][hapmap]
rs2903289	1.00[MEX][hapmap]
rs57024191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57142024	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57792330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58167062	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58647525	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59040560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59647595	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61185792	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62304096	0.93[ASN][1000 genomes]
rs6852489	0.93[ASN][1000 genomes]
rs72861970	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72861971	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72861972	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72861973	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72861975	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7669299	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1010104	chr4:78520674-78553754	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78522400-78523800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:78522600-78523800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:78523600-78526200	Weak transcription	Liver	Liver

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