Variant report

Variant	rs58167062
Chromosome Location	chr4:78523179-78523180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs41530748	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57024191	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57142024	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57792330	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58647525	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59040560	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59647595	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61185792	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72861970	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861971	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72861972	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72861973	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72861975	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs72861984	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1010104	chr4:78520674-78553754	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78521200-78523600	Enhancers	Liver	Liver
2	chr4:78522200-78523600	Enhancers	HMEC	breast
3	chr4:78522400-78523400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:78522400-78523800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:78522600-78523600	Enhancers	NHEK	skin
6	chr4:78522600-78523800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:78522800-78523600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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