Variant report
| Variant | rs72861973 |
|---|---|
| Chromosome Location | chr4:78525534-78525535 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs17002731 | 0.87[ASN][1000 genomes] |
| rs17002732 | 0.87[ASN][1000 genomes] |
| rs17002734 | 0.87[ASN][1000 genomes] |
| rs17002735 | 0.87[ASN][1000 genomes] |
| rs41530748 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57024191 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57142024 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57792330 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58167062 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs58647525 | 0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59040560 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59647595 | 0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61185792 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62304096 | 0.93[ASN][1000 genomes] |
| rs6852489 | 0.93[ASN][1000 genomes] |
| rs72861970 | 0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72861971 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72861972 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72861975 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72861980 | 0.84[AFR][1000 genomes] |
| rs72861984 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829975 | chr4:78426210-78565198 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010104 | chr4:78520674-78553754 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:78523600-78526200 | Weak transcription | Liver | Liver |
