Variant report

Variant	rs1354006
Chromosome Location	chr4:78527664-78527665
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11868	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17002743	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17002752	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17002753	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1802209	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2584819	0.86[CHB][hapmap]
rs2650915	0.86[CHB][hapmap]
rs2650917	0.86[CHB][hapmap]
rs2903289	1.00[MEX][hapmap];0.84[MKK][hapmap];0.89[AMR][1000 genomes]
rs355690	0.86[CHB][hapmap]
rs41530748	1.00[MEX][hapmap]
rs57149021	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57689159	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59745211	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6854795	0.98[AFR][1000 genomes]
rs72861978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs72861989	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7677202	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1010104	chr4:78520674-78553754	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78527600-78527800	Enhancers	Fetal Lung	lung
2	chr4:78527600-78528400	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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