Variant report

Variant	rs355690
Chromosome Location	chr4:78508771-78508772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78500488..78502218-chr4:78507307..78510203,2	K562	blood:
2	chr4:78504555..78506696-chr4:78507385..78508926,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1354006	0.86[CHB][hapmap]
rs2584819	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2650915	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2650916	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2650917	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs355691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78506800-78508800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:78506800-78510600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr4:78507200-78509200	Enhancers	NHEK	skin
4	chr4:78507400-78508800	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:78507400-78509000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:78507400-78509000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:78507400-78509400	Enhancers	HMEC	breast
8	chr4:78507400-78510000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:78507400-78510200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:78507600-78508800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr4:78507600-78508800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:78507600-78509200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:78508000-78508800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:78508000-78509000	Weak transcription	Fetal Thymus	thymus
15	chr4:78508000-78510400	Enhancers	GM12878-XiMat	blood
16	chr4:78508200-78508800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr4:78508200-78509000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:78508600-78513800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:78508600-78514400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr4:78508600-78515200	Weak transcription	Spleen	Spleen

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