Variant report
| Variant | rs11931481 |
|---|---|
| Chromosome Location | chr4:78328115-78328116 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11933932 | 1.00[EUR][1000 genomes] |
| rs11935938 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11938186 | 1.00[EUR][1000 genomes] |
| rs11945068 | 1.00[YRI][hapmap] |
| rs1500503 | 0.83[EUR][1000 genomes] |
| rs1604153 | 1.00[CHB][hapmap];0.83[EUR][1000 genomes] |
| rs17002514 | 1.00[YRI][hapmap] |
| rs17002698 | 1.00[EUR][1000 genomes] |
| rs17002711 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs2903238 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4318671 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58419747 | 1.00[EUR][1000 genomes] |
| rs58640391 | 1.00[AMR][1000 genomes] |
| rs60009608 | 1.00[EUR][1000 genomes] |
| rs60146447 | 1.00[EUR][1000 genomes] |
| rs60750805 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60775040 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60782487 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61341260 | 1.00[EUR][1000 genomes] |
| rs7654195 | 1.00[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs7669299 | 1.00[CHB][hapmap] |
| rs7679420 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7679452 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7694642 | 0.83[EUR][1000 genomes] |
| rs9761182 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829974 | chr4:78240718-78415642 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv594698 | chr4:78291876-78334483 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
