Variant report

Variant	rs60146447
Chromosome Location	chr4:78373402-78373403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11933932	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938186	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1500503	0.83[EUR][1000 genomes]
rs1604153	0.83[EUR][1000 genomes]
rs17002698	1.00[EUR][1000 genomes]
rs17002711	1.00[EUR][1000 genomes]
rs2903238	1.00[EUR][1000 genomes]
rs4318671	1.00[EUR][1000 genomes]
rs58419747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60009608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60750805	1.00[EUR][1000 genomes]
rs60782487	1.00[EUR][1000 genomes]
rs61341260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7694642	0.83[EUR][1000 genomes]
rs9761182	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78357400-78373800	Weak transcription	Spleen	Spleen
2	chr4:78367800-78374800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:78370600-78374200	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:78371400-78374800	Weak transcription	Fetal Lung	lung
5	chr4:78373200-78375000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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