Variant report
| Variant | rs2903238 |
|---|---|
| Chromosome Location | chr4:78320835-78320836 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CNOT6L-1 | chr4:78320747-78320948 | XLOC_003994 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11933932 | 1.00[EUR][1000 genomes] |
| rs11938186 | 1.00[EUR][1000 genomes] |
| rs1500503 | 0.83[EUR][1000 genomes] |
| rs1604153 | 0.83[EUR][1000 genomes] |
| rs17002698 | 1.00[EUR][1000 genomes] |
| rs17002711 | 1.00[EUR][1000 genomes] |
| rs4318671 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58419747 | 1.00[EUR][1000 genomes] |
| rs60009608 | 1.00[EUR][1000 genomes] |
| rs60146447 | 1.00[EUR][1000 genomes] |
| rs60750805 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60782487 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61341260 | 1.00[EUR][1000 genomes] |
| rs7654195 | 1.00[EUR][1000 genomes] |
| rs7694642 | 0.83[EUR][1000 genomes] |
| rs9761182 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1845782 | chr4:78237955-78321598 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv829974 | chr4:78240718-78415642 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv594698 | chr4:78291876-78334483 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | esv3467911 | chr4:78320761-78320868 | Inactive region | lncRNA | n/a | inside rSNPs | diseases |
| 5 | esv3467912 | chr4:78320775-78320864 | Inactive region | lncRNA | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
