Variant report

Variant	rs7694642
Chromosome Location	chr4:78484352-78484353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11933932	0.83[EUR][1000 genomes]
rs11938186	0.83[EUR][1000 genomes]
rs1500503	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604153	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17002698	0.83[EUR][1000 genomes]
rs17002711	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2903238	0.83[EUR][1000 genomes]
rs56722245	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58419747	0.83[EUR][1000 genomes]
rs58768750	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60009608	0.83[EUR][1000 genomes]
rs60146447	0.83[EUR][1000 genomes]
rs60750805	0.83[EUR][1000 genomes]
rs60782487	0.83[EUR][1000 genomes]
rs61251130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61341260	0.83[EUR][1000 genomes]
rs7654195	0.83[EUR][1000 genomes]
rs9761182	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78480800-78484600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:78482800-78487000	Enhancers	Pancreas	Pancrea
3	chr4:78484200-78484800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:78484200-78485200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:78484200-78486600	Enhancers	Lung	lung
6	chr4:78484200-78486600	Enhancers	Stomach Mucosa	stomach
7	chr4:78484200-78488000	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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