Variant report

Variant	rs61251130
Chromosome Location	chr4:78482476-78482477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56722245	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58768750	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7694642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78474800-78482800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:78480600-78482800	Enhancers	Fetal Intestine Small	intestine
3	chr4:78480800-78484600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:78481000-78482800	Enhancers	Fetal Intestine Large	intestine
5	chr4:78481600-78482800	Weak transcription	Pancreas	Pancrea
6	chr4:78482000-78484200	Weak transcription	Liver	Liver
7	chr4:78482000-78484200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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