Variant report

Variant	rs17003491
Chromosome Location	chr21:15906720-15906721
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:15900972..15903079-chr21:15904912..15907876,2	K562	blood:
2	chr21:15904288..15906853-chr21:15912996..15915455,2	K562	blood:
3	chr21:15905941..15908063-chr21:15951429..15954293,3	K562	blood:
4	chr21:15904966..15908708-chr21:15954963..15957807,4	K562	blood:
5	chr21:15904847..15907317-chr21:16028940..16030930,2	K562	blood:

Variant related genes	Relation type
ENSG00000155307	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17003466	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17003477	0.91[AFR][1000 genomes]
rs17003493	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17003494	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17003525	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17274324	1.00[EUR][1000 genomes]
rs7282081	1.00[YRI][hapmap]
rs9305297	1.00[YRI][hapmap]
rs9941903	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv913409	chr21:15885274-15908642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1058533	chr21:15896056-15948474	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv544377	chr21:15896056-15948474	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	esv2763685	chr21:15904945-15933282	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15904200-15908000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr21:15904200-15908400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr21:15904600-15907400	Enhancers	Dnd41	blood
4	chr21:15904600-15907400	Enhancers	Hela-S3	cervix
5	chr21:15904600-15913600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr21:15905200-15907200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr21:15905400-15907400	Enhancers	HUVEC	blood vessel
8	chr21:15905800-15906800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr21:15905800-15906800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr21:15905800-15906800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr21:15905800-15906800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr21:15905800-15906800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr21:15905800-15906800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr21:15905800-15907000	Enhancers	HMEC	breast
15	chr21:15905800-15907200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr21:15905800-15907200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr21:15905800-15912000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr21:15906000-15907000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr21:15906000-15907000	Transcr. at gene 5' and 3'	K562	blood
20	chr21:15906000-15907200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr21:15906000-15907200	Active TSS	Duodenum Mucosa	Duodenum
22	chr21:15906000-15907200	Active TSS	Rectal Mucosa Donor 29	rectum
23	chr21:15906000-15907400	Enhancers	Primary T cells from cord blood	blood
24	chr21:15906000-15908200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr21:15906200-15906800	Enhancers	Fetal Thymus	thymus
26	chr21:15906200-15907200	Enhancers	NHEK	skin
27	chr21:15906400-15906800	Active TSS	Primary T cells fromperipheralblood	blood
28	chr21:15906400-15907600	Weak transcription	Primary B cells from cord blood	blood
29	chr21:15906400-15907800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr21:15906600-15906800	Flanking Active TSS	Primary B cells from peripheral blood	blood
31	chr21:15906600-15906800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr21:15906600-15906800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr21:15906600-15906800	Flanking Active TSS	GM12878-XiMat	blood
34	chr21:15906600-15907000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr21:15906600-15907200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr21:15906600-15907400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
37	chr21:15906600-15907600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr21:15906600-15908000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr21:15906600-15908200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr21:15906600-15908200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

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