Variant report

Variant	rs17003466
Chromosome Location	chr21:15899374-15899375
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15893314..15896057-chr21:15897268..15899492,2	K562	blood:
2	chr21:15898174..15900938-chr21:15917034..15919951,2	K562	blood:

Variant related genes	Relation type
ENSG00000155307	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17003477	1.00[EUR][1000 genomes]
rs17003491	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17003493	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17003494	1.00[CEU][hapmap]
rs17003525	1.00[CEU][hapmap]
rs2064029	1.00[AMR][1000 genomes]
rs28454941	1.00[AMR][1000 genomes]
rs28677993	1.00[AMR][1000 genomes]
rs3888706	1.00[AMR][1000 genomes]
rs3888707	1.00[AMR][1000 genomes]
rs3895080	1.00[AMR][1000 genomes]
rs7282081	1.00[YRI][hapmap]
rs7283445	1.00[AMR][1000 genomes]
rs748911	1.00[AMR][1000 genomes]
rs760300	1.00[AMR][1000 genomes]
rs9305297	1.00[YRI][hapmap]
rs9808788	1.00[AMR][1000 genomes]
rs9941903	1.00[YRI][hapmap]
rs9981335	1.00[AMR][1000 genomes]
rs9982404	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv913406	chr21:15875108-15905580	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv1796464	chr21:15884475-15900198	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1800015	chr21:15884475-15906590	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv913408	chr21:15885274-15905580	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv913409	chr21:15885274-15908642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv459097	chr21:15886919-15902978	Strong transcription Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv587045	chr21:15886919-15902978	Flanking Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv459098	chr21:15886919-15906590	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv587046	chr21:15886919-15906590	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv913410	chr21:15889553-15906590	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1058533	chr21:15896056-15948474	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv544377	chr21:15896056-15948474	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv587047	chr21:15896422-15906590	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15853400-15905400	Weak transcription	HUVEC	blood vessel
2	chr21:15893000-15899400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr21:15896200-15899600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr21:15896200-15904200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr21:15896200-15906200	Weak transcription	Fetal Thymus	thymus
6	chr21:15897400-15899600	Enhancers	Primary T cells from cord blood	blood
7	chr21:15897400-15901600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr21:15897400-15902200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr21:15897800-15899400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr21:15898200-15899600	Enhancers	Primary B cells from peripheral blood	blood
11	chr21:15898400-15899800	Transcr. at gene 5' and 3'	K562	blood
12	chr21:15898400-15900000	Enhancers	Primary B cells from cord blood	blood
13	chr21:15898600-15900000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr21:15898600-15900000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr21:15898600-15900000	Flanking Active TSS	GM12878-XiMat	blood
16	chr21:15898600-15900200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr21:15898600-15901000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr21:15898600-15901000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr21:15898800-15900000	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr21:15898800-15900200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr21:15899000-15899400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr21:15899000-15899800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr21:15899000-15900000	Active TSS	Primary T cells fromperipheralblood	blood
24	chr21:15899000-15900000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chr21:15899000-15900000	Active TSS	Duodenum Mucosa	Duodenum
26	chr21:15899000-15900000	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr21:15899200-15899400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr21:15899200-15899400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
29	chr21:15899200-15899400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr21:15899200-15899600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr21:15899200-15899800	Enhancers	Thymus	Thymus
32	chr21:15899200-15900000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
33	chr21:15899200-15900000	Flanking Active TSS	Dnd41	blood

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