Variant report
| Variant | rs9982404 |
|---|---|
| Chromosome Location | chr21:16029214-16029215 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226751 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs17003466 | 1.00[AMR][1000 genomes] |
| rs2064029 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28454941 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28677993 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3888706 | 1.00[AMR][1000 genomes] |
| rs3888707 | 1.00[AMR][1000 genomes] |
| rs3895080 | 1.00[AMR][1000 genomes] |
| rs7283445 | 1.00[AMR][1000 genomes] |
| rs748911 | 1.00[AMR][1000 genomes] |
| rs760300 | 1.00[AMR][1000 genomes] |
| rs9808788 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9981335 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834045 | chr21:15900678-16112850 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv834046 | chr21:15903792-16077369 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv3457 | chr21:15996855-16042349 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
