Variant report

Variant	rs17003690
Chromosome Location	chr4:80182016-80182017
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10013555	0.81[ASN][1000 genomes]
rs10032360	0.82[ASN][1000 genomes]
rs10032363	0.82[ASN][1000 genomes]
rs1080690	0.87[ASN][1000 genomes]
rs11098603	0.82[ASN][1000 genomes]
rs11098609	1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs11732616	0.82[ASN][1000 genomes]
rs13143413	0.81[ASN][1000 genomes]
rs1385055	0.81[ASN][1000 genomes]
rs1484142	0.94[AFR][1000 genomes]
rs17003688	0.89[LWK][hapmap];0.86[AFR][1000 genomes]
rs17003689	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1955232	0.87[ASN][1000 genomes]
rs4246718	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs4302482	0.88[JPT][hapmap]
rs4385093	0.82[ASN][1000 genomes]
rs4527507	0.80[EUR][1000 genomes]
rs4530664	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs4535356	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4975080	0.81[ASN][1000 genomes]
rs4975166	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.81[ASN][1000 genomes]
rs4975173	0.82[ASN][1000 genomes]
rs56008448	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56205707	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58479998	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6534253	0.82[ASN][1000 genomes]
rs6826553	0.84[ASN][1000 genomes]
rs6827253	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs6832917	0.82[ASN][1000 genomes]
rs72870807	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72870815	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72870819	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72870833	0.90[AFR][1000 genomes]
rs7656444	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7659766	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7667438	0.82[ASN][1000 genomes]
rs7676343	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap];0.81[ASN][1000 genomes]
rs7694880	0.82[ASN][1000 genomes]
rs9993157	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80165400-80194000	Weak transcription	Aorta	Aorta
2	chr4:80181200-80182400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links