Variant report

Variant	rs17003764
Chromosome Location	chr4:80415810-80415811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1371994	0.95[AFR][1000 genomes]
rs1595965	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17003763	1.00[AFR][1000 genomes]
rs17003766	0.90[AFR][1000 genomes]
rs55872294	1.00[AFR][1000 genomes]
rs56688758	1.00[AFR][1000 genomes]
rs58663473	1.00[AFR][1000 genomes]
rs73830513	1.00[AFR][1000 genomes]
rs998438	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3432913	chr4:80274683-80416584	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80413600-80419800	Active TSS	Right Atrium	heart
2	chr4:80413800-80417000	Active TSS	Adipose Nuclei	Adipose
3	chr4:80414600-80417000	Active TSS	Stomach Smooth Muscle	stomach
4	chr4:80415200-80416600	Active TSS	Skeletal Muscle Male	skeletal muscle
5	chr4:80415600-80418000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:80415800-80416000	Enhancers	Aorta	Aorta
7	chr4:80415800-80416600	Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr4:80415800-80416800	Active TSS	Psoas Muscle	Psoas
9	chr4:80415800-80417000	Active TSS	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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