Variant report

Variant	rs1595965
Chromosome Location	chr4:80413707-80413708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMP2K-3	chr4:80413570-80413777	ENSG00000250334

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1371994	0.95[AFR][1000 genomes]
rs17003763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003764	1.00[AFR][1000 genomes]
rs17003766	0.90[AFR][1000 genomes]
rs55654185	1.00[AMR][1000 genomes]
rs55792595	1.00[AMR][1000 genomes]
rs55859303	1.00[AMR][1000 genomes]
rs55872294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56186530	1.00[AMR][1000 genomes]
rs56329446	1.00[AMR][1000 genomes]
rs56688758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56843365	1.00[AMR][1000 genomes]
rs57053384	1.00[AMR][1000 genomes]
rs57446615	1.00[AMR][1000 genomes]
rs57523212	1.00[AMR][1000 genomes]
rs58663473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58905331	1.00[AMR][1000 genomes]
rs72872361	1.00[AMR][1000 genomes]
rs73828279	1.00[AMR][1000 genomes]
rs73828288	1.00[AMR][1000 genomes]
rs73828294	1.00[AMR][1000 genomes]
rs73830508	1.00[AMR][1000 genomes]
rs73830509	1.00[AMR][1000 genomes]
rs73830513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830515	1.00[AMR][1000 genomes]
rs73830518	1.00[AMR][1000 genomes]
rs73830521	1.00[AMR][1000 genomes]
rs73830527	1.00[AMR][1000 genomes]
rs73830531	1.00[AMR][1000 genomes]
rs73830533	1.00[AMR][1000 genomes]
rs73830535	1.00[AMR][1000 genomes]
rs73830536	1.00[AMR][1000 genomes]
rs73830537	1.00[AMR][1000 genomes]
rs73830538	1.00[AMR][1000 genomes]
rs73830539	1.00[AMR][1000 genomes]
rs73830540	1.00[AMR][1000 genomes]
rs73830543	1.00[AMR][1000 genomes]
rs998438	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3432913	chr4:80274683-80416584	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80413400-80413800	Flanking Active TSS	Adipose Nuclei	Adipose
2	chr4:80413400-80415800	Weak transcription	Aorta	Aorta
3	chr4:80413600-80419800	Active TSS	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links