Variant report

Variant	rs73830535
Chromosome Location	chr4:80489802-80489803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:80281030..80283740-chr4:80487916..80490045,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1595965	1.00[AMR][1000 genomes]
rs17003763	1.00[AMR][1000 genomes]
rs55654185	1.00[AMR][1000 genomes]
rs55792595	1.00[AMR][1000 genomes]
rs55859303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55872294	1.00[AMR][1000 genomes]
rs56186530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56329446	1.00[AMR][1000 genomes]
rs56688758	1.00[AMR][1000 genomes]
rs56843365	1.00[AMR][1000 genomes]
rs57053384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57446615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57523212	1.00[AMR][1000 genomes]
rs58663473	1.00[AMR][1000 genomes]
rs58905331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72872361	1.00[AMR][1000 genomes]
rs73828279	1.00[AMR][1000 genomes]
rs73828288	1.00[AMR][1000 genomes]
rs73828294	1.00[AMR][1000 genomes]
rs73830508	1.00[AMR][1000 genomes]
rs73830509	1.00[AMR][1000 genomes]
rs73830513	1.00[AMR][1000 genomes]
rs73830515	1.00[AMR][1000 genomes]
rs73830518	1.00[AMR][1000 genomes]
rs73830521	1.00[AMR][1000 genomes]
rs73830527	1.00[AMR][1000 genomes]
rs73830531	1.00[AMR][1000 genomes]
rs73830533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830537	1.00[AMR][1000 genomes]
rs73830538	1.00[AMR][1000 genomes]
rs73830539	1.00[AMR][1000 genomes]
rs73830540	1.00[AMR][1000 genomes]
rs73830543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80481800-80490800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:80483400-80490800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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