Variant report

Variant	rs72872361
Chromosome Location	chr4:80283866-80283867
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1595965	1.00[AMR][1000 genomes]
rs17003763	1.00[AMR][1000 genomes]
rs55654185	1.00[AMR][1000 genomes]
rs55792595	1.00[AMR][1000 genomes]
rs55859303	1.00[AMR][1000 genomes]
rs55872294	1.00[AMR][1000 genomes]
rs56186530	1.00[AMR][1000 genomes]
rs56329446	1.00[AMR][1000 genomes]
rs56688758	1.00[AMR][1000 genomes]
rs56843365	1.00[AMR][1000 genomes]
rs57053384	1.00[AMR][1000 genomes]
rs57446615	1.00[AMR][1000 genomes]
rs57523212	1.00[AMR][1000 genomes]
rs58663473	1.00[AMR][1000 genomes]
rs58905331	1.00[AMR][1000 genomes]
rs73828214	1.00[AMR][1000 genomes]
rs73828217	1.00[AMR][1000 genomes]
rs73828218	1.00[AMR][1000 genomes]
rs73828279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73828288	1.00[AMR][1000 genomes]
rs73828294	1.00[AMR][1000 genomes]
rs73830508	1.00[AMR][1000 genomes]
rs73830509	1.00[AMR][1000 genomes]
rs73830513	1.00[AMR][1000 genomes]
rs73830515	1.00[AMR][1000 genomes]
rs73830518	1.00[AMR][1000 genomes]
rs73830521	1.00[AMR][1000 genomes]
rs73830527	1.00[AMR][1000 genomes]
rs73830531	1.00[AMR][1000 genomes]
rs73830533	1.00[AMR][1000 genomes]
rs73830535	1.00[AMR][1000 genomes]
rs73830536	1.00[AMR][1000 genomes]
rs73830537	1.00[AMR][1000 genomes]
rs73830538	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3432913	chr4:80274683-80416584	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80274800-80287000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr4:80275200-80288000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:80281600-80285200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:80282800-80286800	Weak transcription	K562	blood
5	chr4:80283600-80284000	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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