Variant report

Variant	rs73830543
Chromosome Location	chr4:80522383-80522384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1595965	1.00[AMR][1000 genomes]
rs17003763	1.00[AMR][1000 genomes]
rs55654185	1.00[AMR][1000 genomes]
rs55792595	1.00[AMR][1000 genomes]
rs55859303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55872294	1.00[AMR][1000 genomes]
rs56186530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56329446	1.00[AMR][1000 genomes]
rs56688758	1.00[AMR][1000 genomes]
rs56843365	1.00[AMR][1000 genomes]
rs57053384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57446615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57523212	1.00[AMR][1000 genomes]
rs58663473	1.00[AMR][1000 genomes]
rs58905331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73828279	1.00[AMR][1000 genomes]
rs73828288	1.00[AMR][1000 genomes]
rs73828294	1.00[AMR][1000 genomes]
rs73830508	1.00[AMR][1000 genomes]
rs73830509	1.00[AMR][1000 genomes]
rs73830513	1.00[AMR][1000 genomes]
rs73830515	1.00[AMR][1000 genomes]
rs73830518	1.00[AMR][1000 genomes]
rs73830521	1.00[AMR][1000 genomes]
rs73830527	1.00[AMR][1000 genomes]
rs73830531	1.00[AMR][1000 genomes]
rs73830533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830537	1.00[AMR][1000 genomes]
rs73830538	1.00[AMR][1000 genomes]
rs73830539	1.00[AMR][1000 genomes]
rs73830540	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80520200-80532600	Weak transcription	Aorta	Aorta
2	chr4:80521000-80522800	Enhancers	Primary B cells from peripheral blood	blood
3	chr4:80521000-80525000	Weak transcription	K562	blood
4	chr4:80521200-80523400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:80521800-80523800	Weak transcription	Primary T cells from cord blood	blood
6	chr4:80522200-80522400	Enhancers	Primary T regulatory cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links