Variant report

Variant	rs17003982
Chromosome Location	chr4:80520780-80520781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11933119	0.82[EUR][1000 genomes]
rs11935255	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17003979	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17003987	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17445100	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80519200-80520800	Enhancers	Primary B cells from cord blood	blood
2	chr4:80519200-80521000	Enhancers	Colon Smooth Muscle	Colon
3	chr4:80519200-80521000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr4:80519200-80521200	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:80519400-80521800	Enhancers	Primary T cells from cord blood	blood
6	chr4:80519600-80520800	Weak transcription	Right Atrium	heart
7	chr4:80519800-80521000	Enhancers	Fetal Brain Male	brain
8	chr4:80520000-80520800	Weak transcription	Psoas Muscle	Psoas
9	chr4:80520000-80521000	Enhancers	Fetal Brain Female	brain
10	chr4:80520200-80521000	Flanking Active TSS	Primary B cells from peripheral blood	blood
11	chr4:80520200-80532600	Weak transcription	Aorta	Aorta
12	chr4:80520400-80520800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr4:80520400-80520800	Weak transcription	K562	blood
14	chr4:80520600-80521400	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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