Variant report

Variant	rs17445100
Chromosome Location	chr4:80497040-80497041
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10028776	0.84[EUR][1000 genomes]
rs11933119	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11935255	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs17003979	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17003982	0.89[EUR][1000 genomes]
rs17003987	0.92[EUR][1000 genomes]
rs3906810	0.84[EUR][1000 genomes]
rs58883855	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879507	chr4:80365765-80552199	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879508	chr4:80398708-80552199	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80491000-80497400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:80495600-80497800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:80495600-80497800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:80495800-80497800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:80495800-80497800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:80496000-80497800	Enhancers	Adipose Nuclei	Adipose
7	chr4:80496200-80497600	Enhancers	Fetal Stomach	stomach
8	chr4:80496400-80497800	Enhancers	Fetal Heart	heart
9	chr4:80496600-80499800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:80496800-80497200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:80496800-80497200	Weak transcription	K562	blood
12	chr4:80497000-80497800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:80497000-80497800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:80497000-80497800	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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