Variant report

Variant	rs17005107
Chromosome Location	chr4:82234697-82234698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17005105	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005109	1.00[AMR][1000 genomes]
rs17005114	1.00[AMR][1000 genomes]
rs17005128	1.00[AMR][1000 genomes]
rs56293708	1.00[AMR][1000 genomes]
rs58251348	1.00[AMR][1000 genomes]
rs58569388	1.00[AMR][1000 genomes]
rs6842454	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6843948	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72884199	1.00[AMR][1000 genomes]
rs72885808	1.00[AMR][1000 genomes]
rs73829545	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73829554	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82233800-82234800	Weak transcription	Pancreas	Pancrea
2	chr4:82234400-82236800	Enhancers	Stomach Mucosa	stomach
3	chr4:82234600-82235600	Enhancers	NHDF-Ad	bronchial
4	chr4:82234600-82235800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:82234600-82235800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:82234600-82237200	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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