Variant report

Variant	rs73829554
Chromosome Location	chr4:82272522-82272523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17005105	1.00[AMR][1000 genomes]
rs17005107	1.00[AMR][1000 genomes]
rs17005109	1.00[AMR][1000 genomes]
rs17005114	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17005128	1.00[AMR][1000 genomes]
rs56293708	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58251348	1.00[AMR][1000 genomes]
rs58569388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6842454	1.00[AMR][1000 genomes]
rs6843948	1.00[AMR][1000 genomes]
rs72884199	1.00[AMR][1000 genomes]
rs72885808	1.00[AMR][1000 genomes]
rs73829545	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82267600-82273400	Enhancers	Fetal Intestine Large	intestine
2	chr4:82270200-82273000	Weak transcription	Fetal Lung	lung
3	chr4:82271000-82273000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:82271000-82273000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:82271000-82273800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:82271400-82273400	Enhancers	Fetal Intestine Small	intestine
7	chr4:82271600-82272800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:82272000-82274200	Enhancers	NHLF	lung
9	chr4:82272200-82275400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:82272400-82273000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:82272400-82273000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:82272400-82273000	Enhancers	Stomach Mucosa	stomach
13	chr4:82272400-82273200	Enhancers	NHDF-Ad	bronchial
14	chr4:82272400-82273600	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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