Variant report

Variant	rs17006655
Chromosome Location	chr3:70077075-70077076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12171315	1.00[EUR][1000 genomes]
rs59568939	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6769936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795941	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6796351	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6808477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836003	1.00[EUR][1000 genomes]
rs73836004	1.00[EUR][1000 genomes]
rs73836006	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836007	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836008	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836009	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73836011	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9822064	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9826015	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9866289	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs9873906	0.91[EUR][1000 genomes]
rs9879984	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533396	chr3:69964029-70538306	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:70063800-70098000	Weak transcription	Aorta	Aorta
2	chr3:70076800-70078200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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